bionty.Phenotype#

class bionty.Phenotype(species=None, source=None, version=None, **kwargs)#

Bases: Bionty

Phenotype.

1. Human Phenotype Ontology Edits of terms are coordinated and reviewed on: https://hpo.jax.org/app/

2. Mammalian Phenotype Ontology Edits of terms are coordinated and reviewed on: mgijax/mammalian-phenotype-ontology

3. Zebrafish Phenotype Ontology Edits of terms are coordinated and reviewed on: obophenotype/zebrafish-phenotype-ontology

Parameters:

  • species – name of Species entity.

  • source – The key of the source in the local.yml versions file. Get all available databases with bionty.display_available_sources.

  • version – The version of the ontology. Typically a date or an actual version. Get available versions with bionty.display_available_sources.

Attributes

fields property#

All Bionty entity fields.

source property#

Name of the source.

species property#

The name of Species Bionty.

version property#

The name of version entity Bionty.